Welcome to CBOP (Coordinate-Based Organization of Proteins) .
C-BOP is a fully automated method which organizes all SCOP 1.65 domains with less than 95% sequence identity into clusters of structurally similar domains. For each cluster a Multiple Structural Alignment (MSTA) provides position-specific information on these structural similarities. The clusters were constructed using structural alignments and hierarchical clustering.
Browse CBOP
HTML-colored versions of the MSTAs with
secondary structure information included
Interactive map of the CBOP protein structure space
Download files:
Detailed description of the method
List of all 12,874 domains in the database
Data on all 5463 clusters
Tar-file (275Mb) containing PDBs for all 12,874 domains
Tar-file (0.7Mb) containing MSTAs for all 1351 clusters with more than 2 members.
Tar-file (0.9Mb) containing MSTAs with secondary structure for all 1351 clusters with more than 2 members.