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Protein model builder

Check the status of a job here.

Paste in target sequence

Paste in alignment (accepted formats are CASP and PIR)

Paste in predicted secondary structure (Helix, Coil, Sheet)

Ex: HHHHHHCCCCCCCEEEEE..., for each residue in the target sequence



Protein model builder builds a protein models from an alignment on a known template structure.
To use it you need an academic license of MODELLER. The necessary key can be obtained here.