Publication list

Peer-reviewed articles in international journals

  1. Linder, M.; Britton, T. & Sennblad, B. Evaluation of Bayesian models of substitution rate evolution – Parental guiding vs. independence Syst. Biol., In Press.
  2. Åkerborg, Ö.; Sennblad, B.; Arvestad, L. and Lagergren, J., 2009, Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. PNAS 106:5714-5719.
  3. Arvestad, L., J. Lagergren, and Sennblad, B., 2009, The gene evolution model and computing its likelihood, J. ACM 56:1-44
  4. Sennblad, B. and Lagergren, J., 2009, Probabilistic orthology analysis, Systematic Biology 58:411-424
  5. Åkerborg, Ö., Sennblad, B. and Lagergren, J., 2008, Birth-death prior on phylogeny and speed dating, BMC Evolutionary Biology 8:77.
  6. Sennblad, B., Schreil, E., Berglund-Sonnhammer, A.-C., Lagergren, J., Arvestad, L., 2007, PRIMETV: a viewer for reconciled trees. BMC Bioinformatics, 8:148.
  7. Endress, M.E., Sennblad, B., Ham, R., Nilsson, S., Potgieter, K., Civeyrel, L., Chase, M., Joseph, J., Powell, M., Lorence, D., Igersheim, A., Albert, V.A., Zimmerman, Y., 2007, An analysis of the Alyxieae (Apocynaceae) based on rbcL, matK, trnL intron, trnL-F spacer sequences, and morphological characters. Annals of the Missouri Botanical Gardens, 94:1- 35.
  8. McCarthy, S., Tabar, S.M., Mizuno, Y., Sennblad, B., Hoffstedt, J., Arner, P., Wahlestedt, C., Andersson, B., 2005, Complex HTR2C linkage disequilibrium and promoter associations with body mass index and serum leptin. Human Genetics, 117, 545-57.
  9. Arvestad, L., Berglund, A., Lagergren, J., Sennblad, B., 2003, Bayesian gene/species tree reconciliation and orthology analysis using MCMC, Bioinformatics, 19 Suppl 1, i7- 15.
  10. Sennblad, B., Bremer, B., 2002, Classification of Apocynaceae s.l. according to a new approach combining Linnaean and Phylogenetic taxonomy. Systematic Biology 3:1-21.
  11. Bremer, K., Backlund, A., Sennblad, B., Swenson, U., Andreasen, K., Gustafsson, M. H. G., Hjertson, M., Lundberg, J., Backlund, M., Bremer, B., 2001, A phylogenetic analysis of 100+ genera and 50+ families of euasterids based on morphological and molecular data with notes on possible higher level morphological synapomorphies. Plant Systematics and Evolution 229: 137-169.
  12. Sennblad, B., Bremer, B., 2000, Is there a justification for differential a priori weighting in coding sequences? – a case study from rbcL and Apocynaceae. Systematic Biology 49(1): 43-55.
  13. Sennblad, B., Endress, M. E., Bremer, B., 1998, Morphology and molecular data in phylogenetic fraternity – the tribe Wrightieae (Apocynaceae) revisited. Am. J. Bot. 85(8):1143- 1158.
  14. Sennblad, B., Bremer, B., 1996, The familial and subfamilial relationships of Apocy- naceae and Asclepiadaceae evaluated with rbcL data. Plant Systematics and Evolution., 202 , 153-175.
  15. Endress, M.E., Sennblad, B., Nilsson, S., Civeyrel, L., Chase, M.W., Huysmans, S., Grafström, E., Bremer, B., 1996, A phylogenetic analysis of Apocynaceae s.str. and some related taxa in Gentianales: a multidisciplinary approach Opera Botanica Belgica, 7, 59- 102.

Peer-reviewed conference submissions, extended abstracts

– Please note! The following extended abstracts (10 pages) are from highly competitive conferences comparative to high- end journals. As an example the acceptance rate for the conferences cited below were 16.7% and 14%, respectively. As a comparison Mol.Biol.Evol. had an acceptance rate of 35% under the same period. Accepted submissions to these type of conferences are considered a major publication in the computer science community.
  1. Arvestad, L., Berglund, A.-C., Lagergren, J., Sennblad, B., 2004, Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. RECOMB 2004, San Diego, California (http://portal.acm.org/citation.cfm?doid=974657)
  2. Arvestad, L., Berglund, A.-C., Lagergren, J., Sennblad, B., 2003. Bayesian gene/species tree reconciliation and orthology analysis using MCMC. ISMB 2003, Brisbane. (http://www.iscb.org/ismb2003/paper abstracts.shtml)

Other conference submissions

  1. Jie Huang, Maria Sabater-Lleal, Folkert Asselbergs, Jens Baumert, So-Youn Shin, Tiphaine Oudot-Mellkah, David Tregouet, Geoffrey H. Tofler, Qiong Yang, Bengt Sennblad, John Ohrvik, Andrew D. Johnson, Kurt Lohman, Scott M Williams, Jason H. Moore, Jingzhong Ding, Rona J. Strawbridge, Wolfgang Koenig, Pierre-Emmanuel Morange, Yongmei Liu, Nicole Soranzo, Pim van der Harst, Christopher J. O Donnell, Anders Hamsten for the Framingham Heart Study, PROCARDIS, PREVEND, MONICA/KORA, Health ABC, Twins UK, and MARTHA cohorts, 2010, Genome-wide Meta-analysis of Plasminogen Activator Inhibitor Type 1 (PAI-1) Identifies 3 New Loci Independent of the SERPINE1 4G/5G Polymorphism, America n Heart Association Scientific Sessions 2010, Chicago, IL, USA, November 13-17, 2010 (oral presentation by Huang).
  2. Arvestad, L., Lagergren, J., Sennblad, B., 2008, Probabilistic analysis of gene family evolution – gene duplications and sequence evolution. Annual Meeting of the Society of Molecular Biology and Evolution (SMBE) Barcelona, June 5-8, 2008 (oral presentation by Arvestad).
  3. Sennblad, B., 2007, Extending models of genome evolution to include non-hierarchical events. European Society of Evolutionary Biology (ESEB) XI congress, Uppsala, Sweden, August 20–25, 2007 (oral presentation by Sennblad).
  4. Berglund-Sonnhammer, A-C, Arvestad, L., Lagergren, J., Sennblad, B., 2004, BEEP – Bayesian Estimator of Evolutionary Processes, Bioinformatics 2004, Linköping, Sweden, June 3-6, 2004 (poster).
  5. Berglund-Sonnhammer, A-C, Arvestad, L., Lagergren, J., Sennblad, B., 2003, Probabilis- tic Orthology Analysis, 7th evolutionary Biology Meeting (Marseille Palais Longchamp), June 25-27, 2003 (oral presentation by Berglund-Sonnhammer).
  6. Siltberg, J., Lagergren, J., Sennblad, B., Liberles, D. A., 2001, New approaches for the analysis of gene family evolution, ISMB 2001 poster abstracts (poster).
  7. Endress, M. E., Sennblad, B., van der Ham, R. J. M., Nilsson, S., Potgieter, K., Civeyrel, L., Chase, M. W., Joseph, J., Powell, M., Lorence, D., Igersheim, A.,Albert, V. A., 2000, Arils, wings, and other sneaky things: coming to terms with the Alyxieae (Apocynaceae). Botany 2000!, 6-10 August, 2000 Portland, Oregon (oral presentation by Endress).
  8. Sennblad, B. 2000, Early eukaryote evolution, Thirteenth Biennial Meeting of the International Society of Evolutionary Protozoologists, Ceske Budejovice, Czech Republic, 2000 (Oral presentation by Sennblad).