Andrey Alexeyenko
Telephone: +46(0)707472172
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Andrey Alexeyenko Telephone: +46(0)707472172
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Andrey Alexeyenko, Thomas Schmitt, Andreas Tjärnberg, Dimitri Guala, Oliver Frings, Erik L.L. Sonnhammer (2011) Comparative interactomics with Funcoup 2.0 Nucleic Acids Research Dec. 2011 Nov 21. NAR-02446-DATA-E-2011.R1. [Epub ahead of print]. [PDF]
Anna Bennet, Chandra A. Reynolds, Ulrika K. Eriksson, Mun-Gwan Hong, Kaj Blennow, Margaret Gatz, Andrey Alexeyenko, Nancy L. Pedersen, and Jonathan A. Prince (2011) Genetic association of sequence variants near AGER/NOTCH4 and dementia. J Alzheimers Dis. 2011 Jan 1;24(3):475-84. [PDF]
Mun-Gwan Hong, Andrey Alexeyenko, Jean-Charles Lambert, Philippe Amouyel, and Jonathan A. Prince (2010) Genome-wide pathway analysis implicates intracellular transmembrane protein transport in Alzheimer disease. J Hum Genet. 2010 Oct; 55(10):707-9. [PDF]
Andrey Alexeyenko, Deena M. Wassenberg, Edward K. Lobenhofer, Jerry Yen, Erik L.L. Sonnhammer, Elwood Linney, Joel N. Meyer (2010) Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity. PLoS One 2010 May 5; 5(5):e10465.[PDF].
Chandra A. Reynolds, Mun-Gwan Hong, Ulrika K. Eriksson, Kaj Blennow, Fredrik Wiklund, Boo Johansson, Bo Malmberg, Stig Berg, Andrey Alexeyenko, Henrik Grönberg, Margaret Gatz, Nancy L. Pedersen, and Jonathan A. Prince (2010) Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk. Hum Mol Genet. 2010 May 15;19(10):2068-78. [PDF]
Andrey Alexeyenko and Erik L.L. Sonnhammer (2009) Global networks of functional coupling in eukaryotes by comprehensive data integration. Genome Res. 2009 Jun;19(6):1107-16.[PDF].
Rebecca Hunt-Newbury, Ryan Viveiros, Robert Johnsen, Allan Mah, Dina Anastas, Lily Fang, Erin Halfnight, David Lee, John Lin, Adam Lorch, Sheldon McKay, H. Mark Okada, Jie Pan, Ana K. Schulz, Domena Tu, Kim Wong, Z. Zhao, Andrey Alexeyenko, Thomas Burglin, Eric Sonnhammer, Ralf Schnabel, Steven J. Jones, Marco A. Marra, David L. Baillie, Donald G. Moerman (2007) High-throughput in vivo analysis of gene expression in Caenorhabditis elegans. PLoS Biology 2007 Sep;5(9):e237[HTML]
Rochellys Diaz Heijtz, Andrey Alexeyenko and F. Xavier Castellanos (2007) Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD. Behavioral and Brain Functions 2007 Jul 10;3:33 [PDF]
Andrey Alexeyenko, Ivica Tamas, Gang Liu, and Erik L.L. Sonnhammer (2006) Automatic clustering of orthologs and inparalogs shared by multiple proteomes. Bioinformatics 2006 Jul 15;22(14):e9-15. [PDF]
Andrey Alexeyenko, Julia Lindberg, Åsa Pérez-Bercoff and Erik L.L. Sonnhammer (2006) Overview and comparison of ortholog databases. Drug Discovery Today: Technologies (REVIEW ARTICLE) 2006, 3, Issue 2: 137-143 [PDF]
Andrey Alexeyenko, A. Harvey Millar, James Whelan, Erik L.L. Sonnhammer (2006) Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis. Trends Genet. 2006 Nov;22(11):589-93. [PDF]
Systemic view on biological processes
Functional networks of biological molecules
Heterogeneity of cancer
"Practical Proteomics" at Tumor biology / Oncology program, Karolinska Institute (2010, 2011).
"Cancer Systems Biology" at Tumor biology / Oncology program, Karolinska Institutet (2010).
"Frontiers in Translational Medicine" at Master programme in Biomedicine, Karolinska Institutet (2009).
"Experimental design and statistical analysis" at Cell Biology and Genetics PhD program, Karolinska Institutet (2006).
"Applied statistics" for the researchers of Northern Caucasus Research Institute for Horticulture and Viticulture, Krasnodar (2002).
"Expression signatures as biomarkers: solving combinatorial problems with gene networks" Molecular Diagnostics Europe, Stockholm, 19 May 2009 [PPT]
"Reconstructing protein interaction networks in the worm and other animals" Nordic C. elegans network conference , Stockholm, 2 Feb 2008 [PPT]
"Networks of functional coupling in eukaryotes" Moscow Conference on Computational Molecular Biology, 29 Jul 2007 (MCCMB'07)
"A large-scale data integration and protein interaction network project for eukaryotes" ESF Exploratory Workshop "Model Organism Proteomics", Zurich, 12 Apr 2007 [PPT]
"FunCoup: data integration and networks of functional coupling in eukaryotes" Joint CSHL/WT Meeting "Interactome networks", Hinxton, UK; 2 Sep 2006 [PPT]
"Automatic clustering of orthologs and inparalogs shared by multiple proteomes" Intellectual Systems in Molecular Biology, Fortaleza, Brazil; 10 Aug 2006 [PPT]
FunCoup: proteome-scale networks in Eukaryotes
Recent slides
